PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10015750m
Common NameCARUB_v10015750mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB
Protein Properties Length: 285aa    MW: 31979.6 Da    PI: 5.9231
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10015750mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.72.4e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEd++l+  + ++G  +W++ ++  g+ R++k+c++rw +yl
  Carubv10015750m 14 RGPWTPEEDQILISFIIKHGHSNWRALPKQAGLLRCGKSCRLRWMNYL 61
                     89******************************99************97 PP

2Myb_DNA-binding52.11.5e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++TteE++ ++ +++ lG++ W++Ia++++ gRt++++k+ w+++l
  Carubv10015750m  67 RGNFTTEEEDAIITLHQILGNR-WSAIAAKLP-GRTDNEIKNVWHTHL 112
                      89********************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-24564IPR009057Homeodomain-like
PROSITE profilePS5129416.977961IPR017930Myb domain
SuperFamilySSF466891.94E-3010108IPR009057Homeodomain-like
SMARTSM007172.3E-141363IPR001005SANT/Myb domain
PfamPF002495.4E-161461IPR001005SANT/Myb domain
CDDcd001673.35E-111661No hitNo description
PROSITE profilePS5129424.3962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.1E-2665116IPR009057Homeodomain-like
SMARTSM007172.2E-1466114IPR001005SANT/Myb domain
PfamPF002491.3E-1467112IPR001005SANT/Myb domain
CDDcd001673.47E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MGRAPCCEKM GLKRGPWTPE EDQILISFII KHGHSNWRAL PKQAGLLRCG KSCRLRWMNY  60
LKPDIKRGNF TTEEEDAIIT LHQILGNRWS AIAAKLPGRT DNEIKNVWHT HLKKRLEDYQ  120
PAKPKSSTSN KKKGTKPKSE PVLSNSNSTR SESELANSSN PSGESLFSSS PSSSEVSSMT  180
VHMSHEGHDS NEAKMDNKPI IDQDCVSFEN FGADIDESFW NETLYSQDEH NYASNGLEVV  240
GLDEHQQFQH LGSVDNEMIF DSEMDFWFDV LARTGGEHDL LAGL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-27121175109B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00375DAPTransfer from AT3G23250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1766170.0AK176617.1 Arabidopsis thaliana mRNA for putative myb-related transcription factor, complete cds, clone: RAFL25-14-I20.
GenBankAK1766930.0AK176693.1 Arabidopsis thaliana mRNA for putative myb-related transcription factor, complete cds, clone: RAFL25-23-N24.
GenBankAY5502960.0AY550296.1 Arabidopsis thaliana MYB transcription factor (At3g23250) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006299575.10.0hypothetical protein CARUB_v10015750mg
TrEMBLR0I7N60.0R0I7N6_9BRAS; Uncharacterized protein
STRINGfgenesh2_kg.3__2539__AT3G23250.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.11e-149myb domain protein 15